org.concord.biologica.ui
Class OrganismAlleleControl

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--javax.swing.JComponent
                    |
                    +--javax.swing.JComboBox
                          |
                          +--org.concord.biologica.ui.BioComboBox
                                |
                                +--org.concord.biologica.ui.OrganismAlleleControl

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.event.ActionListener, java.util.EventListener, java.awt.image.ImageObserver, java.awt.event.ItemListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable

public final class OrganismAlleleControl

extends BioComboBox

implements java.awt.event.ItemListener, java.beans.PropertyChangeListener

This class represents an organism allele combobox in BioLogica.

Version:

$Revision: 1.2 $ $Date: 2002/03/28 17:44:01 $

Author:

$Author: qliao $

See Also:

Serialized Form

Inner classes inherited from class javax.swing.JComboBox

javax.swing.JComboBox.AccessibleJComboBox, javax.swing.JComboBox.KeySelectionManager

Inner classes inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Inner classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Inner classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent

Fields inherited from class javax.swing.JComboBox

actionCommand, dataModel, editor, isEditable, keySelectionManager, lightWeightPopupEnabled, maximumRowCount, renderer, selectedItemReminder

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

OrganismAlleleControl(ChromosomeView aChromosomeView)
Creates an AlleleComboBox given a ChromosomeView

Method Summary

Gene	getGene() Get the Gene associated with this control
Organism	getOrganism() Get the Organism associated with this control
OrganismAllele	getOrganismAllele() Get the OrganismAllele associated with this control
void	itemStateChanged(java.awt.event.ItemEvent event) Handle combo box item changed events.
void	paintLines(java.awt.Graphics g, java.awt.Color selectionColor) Tell organism allele control to paint its lines.
void	paintLines(java.awt.Graphics g, java.awt.Color selectionColor, int x1, int x2, int y1)
boolean	pick(int x, int y) Is this control at the x,y coordinates specified?
void	propertyChange(java.beans.PropertyChangeEvent event) Handle property change events
void	setState(OrganismAllele anOrganismAllele, int chromosomeImageNumber, int xTopLeftChromosomeImage, int yTopLeftChromosomeImage, int yTopLeftComboBox, boolean aSelected) Set the state needed to draw and use this control.

Methods inherited from class org.concord.biologica.ui.BioComboBox

setSelectedIndex

Methods inherited from class javax.swing.JComboBox

actionPerformed, addActionListener, addItem, addItemListener, configureEditor, configurePropertiesFromAction, contentsChanged, createActionPropertyChangeListener, createDefaultKeySelectionManager, fireActionEvent, fireItemStateChanged, getAccessibleContext, getAction, getActionCommand, getEditor, getItemAt, getItemCount, getKeySelectionManager, getMaximumRowCount, getModel, getRenderer, getSelectedIndex, getSelectedItem, getSelectedObjects, getUI, getUIClassID, hidePopup, insertItemAt, installAncestorListener, intervalAdded, intervalRemoved, isEditable, isFocusTraversable, isLightWeightPopupEnabled, isPopupVisible, paramString, processKeyEvent, removeActionListener, removeAllItems, removeItem, removeItemAt, removeItemListener, selectedItemChanged, selectWithKeyChar, setAction, setActionCommand, setEditable, setEditor, setEnabled, setKeySelectionManager, setLightWeightPopupEnabled, setMaximumRowCount, setModel, setPopupVisible, setRenderer, setSelectedItem, setUI, showPopup, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getVerifyInputWhenFocusTarget, getVisibleRect, getWidth, getX, getY, grabFocus, hasFocus, hide, isDoubleBuffered, isFocusCycleRoot, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processFocusEvent, processKeyBinding, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDoubleBuffered, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getLayout, insets, invalidate, isAncestorOf, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setLayout, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, getBackground, getBounds, getColorModel, getComponentOrientation, getCursor, getDropTarget, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getInputContext, getInputMethodRequests, getLocale, getLocation, getLocationOnScreen, getName, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, imageUpdate, inside, isDisplayable, isEnabled, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

OrganismAlleleControl

public OrganismAlleleControl(ChromosomeView aChromosomeView)

Creates an AlleleComboBox given a ChromosomeView

Parameters:

aChromosomeView - ChromosomeView - the view creating this control

aFont - Font - the font to use

Method Detail

getOrganism

public Organism getOrganism()

Get the Organism associated with this control

Returns:

Organism - Organism associated with this control, may be null

getGene

public Gene getGene()

Get the Gene associated with this control

Returns:

Gene - Gene associated with this control, may be null

getOrganismAllele

public OrganismAllele getOrganismAllele()

Get the OrganismAllele associated with this control

Returns:

OrganismAllele - OrganismAllele associated with this control, may be null

setState

public void setState(OrganismAllele anOrganismAllele,
                     int chromosomeImageNumber,
                     int xTopLeftChromosomeImage,
                     int yTopLeftChromosomeImage,
                     int yTopLeftComboBox,
                     boolean aSelected)

Set the state needed to draw and use this control.

Parameters:

anOrganismAllele - OrganismAllele - allele to be associated with this control

chromosomeImageNumber - int - chromosome image number of this allele's chromosome

xTopLeftChromosomeImage - int - x position of top left of image

yTopLeftChromosomeImage - int - y position of top left of image

yTopLeftComboBox - int - y position of allele's combo box

aSelected - boolean - selected?

paintLines

public void paintLines(java.awt.Graphics g,
                       java.awt.Color selectionColor)

Tell organism allele control to paint its lines. Assume the font has been correctly set already.

If this allele is locked, then the combo box will not be visible and we should also draw the allele text symbol.

If the gene is not visible, draw nothing.

If the organism's alleles are locked,

Parameters:

g - Graphics - Graphics object to use in drawing

selectionColor - Color - selection color, may not be null

paintLines

public void paintLines(java.awt.Graphics g,
                       java.awt.Color selectionColor,
                       int x1,
                       int x2,
                       int y1)

pick

public boolean pick(int x,
                    int y)

Is this control at the x,y coordinates specified?

Parameters:

x - int - x coordinate

y - int - y coordinate

Returns:

boolean - at specified coordinates?

itemStateChanged

public void itemStateChanged(java.awt.event.ItemEvent event)

Handle combo box item changed events.

Specified by:

itemStateChanged in interface java.awt.event.ItemListener

Parameters:

event - ItemEvent - change event to handle

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent event)

Handle property change events

Specified by:

propertyChange in interface java.beans.PropertyChangeListener

Parameters:

event - PropertyChangeEvent - the property change event