org.concord.biologica.ui
Class PedigreeOrganism

java.lang.Object
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  +--org.concord.biologica.ui.PedigreeObject
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        +--org.concord.biologica.ui.PedigreeOrganism

public final class PedigreeOrganism

extends PedigreeObject

An object that manages the state for an organism in the pedigree view.

Fields inherited from class org.concord.biologica.ui.PedigreeObject

height, width, xLocation, yLocation

Constructor Summary

PedigreeOrganism(Organism anOrganism, int anXLocation, int aYLocation, int aWidth, int aHeight)
Creates a new pedigree organism.

Method Summary

Organism	getOrganism() Get the organism for this PedigreeOrganism.
void	paint(java.awt.Graphics g, PedigreeOrganismView aPedigreeOrganismView, Trait trait, int fontHeight, SelectionSet selectionSet, SelectionSet highlightSet) Paint the object with the given Graphics object on the given PedigreeOrganismView.

Methods inherited from class org.concord.biologica.ui.PedigreeObject

canSqueeze, getBottomMidPoint, getHeight, getLeftMostParentX, getMinimumMaximum, getRightMostParentX, getTopLeftPoint, getTopMidPoint, getWidth, getXLocation, getYLocation, paintConnections, pick, placeChildren, placeConnections, resetSqueezeFactor, setHeight, setWidth, setXLocation, setYLocation, squeeze, translate, within

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PedigreeOrganism

public PedigreeOrganism(Organism anOrganism,
                        int anXLocation,
                        int aYLocation,
                        int aWidth,
                        int aHeight)

Creates a new pedigree organism.

Note: X and Y locations are now ignored. Placement is done via new PedigreeLevel class. This interface should be changed.

Parameters:

anOrganism - Organism - the organism, may be null

anXLocation - int - x location of organism in pedigree view

aYLocation - int - y location of organism in pedigree view

aWidth - int - width of organism cell

aHeight - int - height of organism cell

Method Detail

getOrganism

public Organism getOrganism()

Get the organism for this PedigreeOrganism.

Returns:

Organism - the organism

paint

public void paint(java.awt.Graphics g,
                  PedigreeOrganismView aPedigreeOrganismView,
                  Trait trait,
                  int fontHeight,
                  SelectionSet selectionSet,
                  SelectionSet highlightSet)

Paint the object with the given Graphics object on the given PedigreeOrganismView.

The vertical positions of the 2 bars (yChildBar and yParentBar) and the horizontal position of the vertical bar (xVerticalBar) are given values and may only be modified by the user by clicking and dragging those bars with the mouse.

Other positions - the ends of the bars and the locations of the lines drawn from the child and parents bars to the children and parents respectively are derived from the positions of the parents and children.

The caller of this method must set the foreground and background colors of the Graphics object before calling this method.

Overrides:

paint in class PedigreeObject

Parameters:

g - Graphics - graphics object to use in painting

pedigreeOrganismView - PedigreeOrganismView - the pedigree organism view

trait - Trait - the trait to show, may be null

fontHeight - int - the font height

selectionSet - SelectionSet - the view's selection set

highlightSet - SelectionSet - the view's highlight set