org.concord.biologica.engine
Class CrossOver

java.lang.Object
  |
  +--org.concord.biologica.engine.CrossOver

public class CrossOver

extends java.lang.Object

Constructor Summary

CrossOver()

Method Summary

Organism	crossOverOrganism(Organism org) create a fake
Family	getCrossOverFamily(Organism one, Organism two, int numberOfChildren, boolean blnOnlyLiveChildren) create a new family when doing crossover
Family	getCrossOverFamily(Organism one, Organism two, int numberFemaleChildren, int numberMaleChildren, boolean blnOnlyLiveChildren) Create a new family when doing crossover
double	getPossibility()
void	setPossibility(double po) change the possibility of crossover
Branch[]	switchAlleles(Branch b1, Branch b2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CrossOver

public CrossOver()

Method Detail

getCrossOverFamily

public Family getCrossOverFamily(Organism one,
                                 Organism two,
                                 int numberOfChildren,
                                 boolean blnOnlyLiveChildren)

create a new family when doing crossover

Parameters:

parentOne - Organism - the first parent of the family

parentTwo - Organism - the second parent of the family

numberOfChildren - int - the number of Children in this family

blnCrossOver - boolean - is Crossover turn on;

Returns:

Family - the new or existing family

getCrossOverFamily

public Family getCrossOverFamily(Organism one,
                                 Organism two,
                                 int numberFemaleChildren,
                                 int numberMaleChildren,
                                 boolean blnOnlyLiveChildren)

Create a new family when doing crossover

Parameters:

one - Organism - the first parent of the family

two - Organism - the second parent of the family

numberFemaleChildren - int - the number of female Children

numberMaleChildren - int - the number of male Children

blnCrossOver - boolean - is Crossover turn on;

Returns:

Family - the new or existing family

setPossibility

public void setPossibility(double po)

change the possibility of crossover

Parameters:

po - int - the new possibility value

getPossibility

public double getPossibility()

crossOverOrganism

public Organism crossOverOrganism(Organism org)

create a fake

Parameters:

po - int - the new possibility value

switchAlleles

public Branch[] switchAlleles(Branch b1,
                              Branch b2)